PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G116100.1
Common NameB456_011G116100, LOC105778583
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 224aa    MW: 25200.7 Da    PI: 7.0422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G116100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-09124164954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Gorai.011G116100.1 124 ARHRRERISEKIRILKRLVPGG-----TKMDTASMLDEAIRYVKFL 164
                         699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.977115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-14120183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-13121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12121177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.32E-10121168No hitNo description
PfamPF000102.1E-6125164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDINPALKLQ THTWNLEIPM DDHILHDQLP LNPIWPSFPL QTPFSTSTTP THLPSATPVY  60
STHHNDQLGH LVEEGEEPEE ELSAMKEMLY KIAAMQPVDI DPSTIRKPKR RNVRISDDPQ  120
SVAARHRRER ISEKIRILKR LVPGGTKMDT ASMLDEAIRY VKFLKRQILE LQRSNDNQQP  180
PPPPPPYPVE WQVAPNKPLG STSETQPGHG FTFGGNGGKP LVL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146741e-179JX614674.1 Gossypium hirsutum clone NBRI_GE58242 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457757.11e-164PREDICTED: transcription factor HEC3-like
TrEMBLA0A0D2VLC21e-164A0A0D2VLC2_G
STRINGPOPTR_0005s06220.13e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-46bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]